Homebrew+Python en mac os x 10.8: error de Fatal Python: PyThreadState_Get: no hay ningún hilo actual que importe mapnik

module

Question

Tengo 2 pitones en mi mac (10.8.3): el predeterminado, y la versión 2.7 de homebrew.

Hasta ahora, podría instalar módulos y usarlos con mi brew python. Instalé mapnik con brew install mapnik (mapnik-2.1.0) y compilé correctamente. Pero, si abro Python e ingreso import mapnik , import mapnik el siguiente error y sale Python:

>>> import mapnik
Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6

Mac os x también muestra una ventana de error, con el siguiente contenido:

Process: Python [60666]
Path: /usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.3 (2.7.3)
Code Type: X86-64 (Native)
Parent Process: bash [60454]
User ID: 501
Date/Time: 2013-03-28 10:21:08.535 +0100
OS Version: Mac OS X 10.8.3 (12D78)
Report Version: 10
Interval Since Last Report: 128837 sec
Crashes Since Last Report: 5
Per-App Crashes Since Last Report: 4
Anonymous UUID: 567121E6-7BAC-335F-E3B0-DD24D1F9E6BA
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Application Specific Information:
abort() called
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff94500d46 __kill + 10
1 libsystem_c.dylib 0x00007fff92afddf0 abort + 177
2 org.python.python 0x0000000105a77eaa Py_FatalError + 49
3 org.python.python 0x0000000105a76370 PyThreadState_Get + 28
4 org.python.python 0x0000000105a71f16 Py_InitModule4_64 + 58
5 libboost_python-mt.dylib 0x0000000104153288 boost::python::detail::init_module(char const*, void (*)()) + 40
6 org.python.python 0x00000001029fa716 _PyImport_LoadDynamicModule + 150
7 org.python.python 0x00000001029fa428 import_submodule + 296
8 org.python.python 0x00000001029f9ff1 load_next + 268
9 org.python.python 0x00000001029f80fb PyImport_ImportModuleLevel + 794
10 org.python.python 0x00000001029de9d3 builtin___import__ + 132
11 org.python.python 0x000000010296e335 PyObject_Call + 101
12 org.python.python 0x00000001029e8e10 PyEval_CallObjectWithKeywords + 93
13 org.python.python 0x00000001029e61b6 PyEval_EvalFrameEx + 11727
14 org.python.python 0x00000001029e32bd PyEval_EvalCodeEx + 1638
15 org.python.python 0x00000001029e2c51 PyEval_EvalCode + 54
16 org.python.python 0x00000001029f6e58 PyImport_ExecCodeModuleEx + 247
17 org.python.python 0x00000001029f99bf load_source_module + 1053
18 org.python.python 0x00000001029f9c7e load_package + 334
19 org.python.python 0x00000001029fa428 import_submodule + 296
20 org.python.python 0x00000001029f9ff1 load_next + 268
21 org.python.python 0x00000001029f80fb PyImport_ImportModuleLevel + 794
22 org.python.python 0x00000001029de9d3 builtin___import__ + 132
23 org.python.python 0x000000010296e335 PyObject_Call + 101
24 org.python.python 0x00000001029e8e10 PyEval_CallObjectWithKeywords + 93
25 org.python.python 0x00000001029e61b6 PyEval_EvalFrameEx + 11727
26 org.python.python 0x00000001029e32bd PyEval_EvalCodeEx + 1638
27 org.python.python 0x00000001029e2c51 PyEval_EvalCode + 54
28 org.python.python 0x0000000102a01a2b run_mod + 53
29 org.python.python 0x0000000102a0184d PyRun_InteractiveOneFlags + 365
30 org.python.python 0x0000000102a01367 PyRun_InteractiveLoopFlags + 188
31 org.python.python 0x0000000102a01218 PyRun_AnyFileExFlags + 60
32 org.python.python 0x0000000102a120b2 Py_Main + 3210
33 libdyld.dylib 0x00007fff966bf7e1 start + 1
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fff5d29c2b0 rcx: 0x00007fff5d29c298 rdx: 0x0000000000000000
rdi: 0x000000000000ecfa rsi: 0x0000000000000006 rbp: 0x00007fff5d29c2c0 rsp: 0x00007fff5d29c298
r8: 0x00000000000003f5 r9: 0x00007fff5d29c270 r10: 0x00007fff94502342 r11: 0x0000000000000206
r12: 0x00007fff5d29cb00 r13: 0x0000000102e9b656 r14: 0x00000000000003f5 r15: 0x0000000000000000
rip: 0x00007fff94500d46 rfl: 0x0000000000000206 cr2: 0x00007fff7bff7ff0
Logical CPU: 0
Binary Images:
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0x102964000 - 0x102a6cfff +org.python.python (2.7.3, [c] 2004-2012 Python Software Foundation. - 2.7.3) <81E6FB4A-287C-37C3-A26D-D045B604933F> /usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/Python
0x102c4c000 - 0x102c4efff +readline.so (0) <C4F1219C-CDFD-37D2-A762-22974D3F2918> /usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-dynload/readline.so
0x102c54000 - 0x102c77fff +libreadline.6.2.dylib (6.2) <2131C2A4-E75D-3680-9C8D-E42D78A5E1B9> /usr/local/opt/readline/lib/libreadline.6.2.dylib
0x102cfc000 - 0x102d01fff +itertools.so (0) <F857A819-40A9-3F72-A0B1-3E97BA5F3DAA> /usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-dynload/itertools.so
0x102d0a000 - 0x102f2cfff +_mapnik.so (0) <433DAD47-AB4D-37C5-A0EA-FE1134B63D3D> /usr/local/lib/python2.7/site-packages/mapnik/_mapnik.so
0x103603000 - 0x103978ff7 +libmapnik.dylib (0) <0E898678-9D86-35B4-A772-0248924F5BF3> /usr/local/Cellar/mapnik/2.1.0/lib/libmapnik.dylib
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0x104293000 - 0x1042e6fff +libtiff.5.dylib (0) <AE85D7B1-F4E5-3B27-832D-5756EFCDE912> /usr/local/lib/libtiff.5.dylib
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0x104333000 - 0x104441ff7 +libicuuc.50.1.dylib (0) <5FDBBF25-EEA6-3649-9ED6-B18CE89CE510> /usr/local/opt/icu4c/lib/libicuuc.50.1.dylib
0x1044a3000 - 0x1044b2fff +libboost_filesystem-mt.dylib (0) <B2C03485-5FA6-3744-BC99-DB4E87DA4D87> /usr/local/lib/libboost_filesystem-mt.dylib
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0x1044ca000 - 0x104578fff +libboost_regex-mt.dylib (0) <BC1D7F46-F6AB-3964-B344-E692EFC5D3B7> /usr/local/lib/libboost_regex-mt.dylib
0x10461c000 - 0x10464bff7 +libjpeg.8.dylib (0) <9EC07360-CF18-3529-AE54-E60DBF1313DC> /usr/local/lib/libjpeg.8.dylib
0x104652000 - 0x105a24fff +libicudata.50.dylib (0) <B74D5789-7082-3084-9BF0-9A3AE6F2B046> /usr/local/opt/icu4c/lib/libicudata.50.dylib
0x105a26000 - 0x105b33fff org.python.python (2.7.2 - 2.7.2) <E7F3EED1-E55D-32AF-9649-77C814693F6A> /System/Library/Frameworks/Python.framework/Versions/2.7/Python
0x7fff62561000 - 0x7fff6259593f dyld (210.2.3) <36CAA36E-72BC-3E48-96D9-B96A2DF77730> /usr/lib/dyld
0x7fff8ae57000 - 0x7fff8ae7cff7 libc++abi.dylib (26) <D86169F3-9F31-377A-9AF3-DB17142052E4> /usr/lib/libc++abi.dylib
0x7fff8c50f000 - 0x7fff8c510ff7 libsystem_sandbox.dylib (220.2) <6838A6FD-8626-3356-BB4F-BB4787216207> /usr/lib/system/libsystem_sandbox.dylib
0x7fff8c511000 - 0x7fff8c523ff7 libz.1.dylib (43) <2A1551E8-A272-3DE5-B692-955974FE1416> /usr/lib/libz.1.dylib
0x7fff8d337000 - 0x7fff8d342fff libsystem_notify.dylib (98.5) <C49275CC-835A-3207-AFBA-8C01374927B6> /usr/lib/system/libsystem_notify.dylib
0x7fff8d9e6000 - 0x7fff8d9ebfff libcompiler_rt.dylib (30) <08F8731D-5961-39F1-AD00-4590321D24A9> /usr/lib/system/libcompiler_rt.dylib
0x7fff8dd72000 - 0x7fff8dd73fff libDiagnosticMessagesClient.dylib (8) <8548E0DC-0D2F-30B6-B045-FE8A038E76D8> /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff902d7000 - 0x7fff90326ff7 libcorecrypto.dylib (106.2) <CE0C29A3-C420-339B-ADAA-52F4683233CC> /usr/lib/system/libcorecrypto.dylib
0x7fff9064f000 - 0x7fff90650fff libsystem_blocks.dylib (59) <D92DCBC3-541C-37BD-AADE-ACC75A0C59C8> /usr/lib/system/libsystem_blocks.dylib
0x7fff90a75000 - 0x7fff90a7dff7 libsystem_dnssd.dylib (379.37) <616FC901-151E-38BF-B2C4-24A351C5FAAD> /usr/lib/system/libsystem_dnssd.dylib
0x7fff914fd000 - 0x7fff9150afff libbz2.1.0.dylib (29) <CE9785E8-B535-3504-B392-82F0064D9AF2> /usr/lib/libbz2.1.0.dylib
0x7fff92899000 - 0x7fff928a7fff libcommonCrypto.dylib (60027) <BAAFE0C9-BB86-3CA7-88C0-E3CBA98DA06F> /usr/lib/system/libcommonCrypto.dylib
0x7fff92aa4000 - 0x7fff92b70ff7 libsystem_c.dylib (825.26) <4C9EB006-FE1F-3F8F-8074-DFD94CF2CE7B> /usr/lib/system/libsystem_c.dylib
0x7fff92bba000 - 0x7fff92bc0ff7 libunwind.dylib (35.1) <21703D36-2DAB-3D8B-8442-EAAB23C060D3> /usr/lib/system/libunwind.dylib
0x7fff92ed3000 - 0x7fff92f3cfff libstdc++.6.dylib (56) <EAA2B53E-EADE-39CF-A0EF-FB9D4940672A> /usr/lib/libstdc++.6.dylib
0x7fff93019000 - 0x7fff93065ff7 libauto.dylib (185.1) <73CDC482-16E3-3FC7-9BB4-FBA2DA44DBC2> /usr/lib/libauto.dylib
0x7fff930cf000 - 0x7fff930d5fff libmacho.dylib (829) <BF332AD9-E89F-387E-92A4-6E1AB74BD4D9> /usr/lib/system/libmacho.dylib
0x7fff93177000 - 0x7fff93199ff7 libxpc.dylib (140.42) <BBE558BD-5E55-35E4-89ED-1AA6B056D05A> /usr/lib/system/libxpc.dylib
0x7fff931f6000 - 0x7fff931f7ff7 libremovefile.dylib (23.2) <6763BC8E-18B8-3AD9-8FFA-B43713A7264F> /usr/lib/system/libremovefile.dylib
0x7fff931f8000 - 0x7fff93260ff7 libc++.1.dylib (65.1) <20E31B90-19B9-3C2A-A9EB-474E08F9FE05> /usr/lib/libc++.1.dylib
0x7fff9345d000 - 0x7fff9365dfff libicucore.A.dylib (491.11.2) <FD6282D8-DF3F-3842-8C2E-CF478D2B9669> /usr/lib/libicucore.A.dylib
0x7fff9365e000 - 0x7fff9365efff libkeymgr.dylib (25) <CC9E3394-BE16-397F-926B-E579B60EE429> /usr/lib/system/libkeymgr.dylib
0x7fff936d4000 - 0x7fff936dcfff liblaunch.dylib (442.26.2) <2F71CAF8-6524-329E-AC56-C506658B4C0C> /usr/lib/system/liblaunch.dylib
0x7fff9424d000 - 0x7fff9427bff7 libsystem_m.dylib (3022.6) <B434BE5C-25AB-3EBD-BAA7-5304B34E3441> /usr/lib/system/libsystem_m.dylib
0x7fff94284000 - 0x7fff94286fff libquarantine.dylib (52) <4BE2E642-A14F-340A-B482-5BD2AEFD9C24> /usr/lib/system/libquarantine.dylib
0x7fff94381000 - 0x7fff94382ff7 libdnsinfo.dylib (453.19) <14202FFB-C3CA-3FCC-94B0-14611BF8692D> /usr/lib/system/libdnsinfo.dylib
0x7fff944ef000 - 0x7fff9450aff7 libsystem_kernel.dylib (2050.22.13) <5A961E2A-CFB8-362B-BC43-122704AEB047> /usr/lib/system/libsystem_kernel.dylib
0x7fff94579000 - 0x7fff94587ff7 libsystem_network.dylib (77.10) <0D99F24E-56FE-380F-B81B-4A4C630EE587> /usr/lib/system/libsystem_network.dylib
0x7fff94821000 - 0x7fff9493992f libobjc.A.dylib (532.2) <90D31928-F48D-3E37-874F-220A51FD9E37> /usr/lib/libobjc.A.dylib
0x7fff9493a000 - 0x7fff9494fff7 libdispatch.dylib (228.23) <D26996BF-FC57-39EB-8829-F63585561E09> /usr/lib/system/libdispatch.dylib
0x7fff95c25000 - 0x7fff95d22ff7 libxml2.2.dylib (22.3) <47B09CB2-C636-3024-8B55-6040F7829B4C> /usr/lib/libxml2.2.dylib
0x7fff96350000 - 0x7fff96351ff7 libSystem.B.dylib (169.3) <9089D72D-E714-31E1-80C8-698A8E8B05AD> /usr/lib/libSystem.B.dylib
0x7fff96397000 - 0x7fff9639cfff libcache.dylib (57) <65187C6E-3FBF-3EB8-A1AA-389445E2984D> /usr/lib/system/libcache.dylib
0x7fff96646000 - 0x7fff9664dfff libcopyfile.dylib (89) <876573D0-E907-3566-A108-577EAD1B6182> /usr/lib/system/libcopyfile.dylib
0x7fff966bd000 - 0x7fff966c0ff7 libdyld.dylib (210.2.3) <F59367C9-C110-382B-A695-9035A6DD387E> /usr/lib/system/libdyld.dylib
0x7fff96961000 - 0x7fff96963ff7 libunc.dylib (25) <92805328-CD36-34FF-9436-571AB0485072> /usr/lib/system/libunc.dylib
0x7fff974ba000 - 0x7fff974f0fff libsystem_info.dylib (406.17) <4FFCA242-7F04-365F-87A6-D4EFB89503C1> /usr/lib/system/libsystem_info.dylib
0x7fff97850000 - 0x7fff97888fff libncurses.5.4.dylib (37.3) <68D5B5F5-8252-3F1E-AFF1-C6AFE145DBC1> /usr/lib/libncurses.5.4.dylib
0x7fff978d3000 - 0x7fff97abdff7 com.apple.CoreFoundation (6.8 - 744.18) <A60C3C9B-3764-3291-844C-C487ACF77C2C> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 18730
thread_create: 2
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=109.5M resident=53.3M(49%) swapped_out_or_unallocated=56.2M(51%)
Writable regions: Total=20.6M written=2644K(13%) resident=3256K(15%) swapped_out=0K(0%) unallocated=17.5M(85%)
REGION TYPE VIRTUAL
=========== =======
MALLOC 11.8M
MALLOC guard page 32K
STACK GUARD 56.0M
Stack 8192K
__DATA 2356K
__LINKEDIT 68.3M
__TEXT 41.2M
__UNICODE 544K
shared memory 12K
=========== =======
TOTAL 188.2M
Model: MacBookPro8,2, BootROM MBP81.0047.B27, 4 processors, Intel Core i7, 2 GHz, 8 GB, SMC 1.69f4
Graphics: Intel HD Graphics 3000, Intel HD Graphics 3000, Built-In, 512 MB
Graphics: AMD Radeon HD 6490M, AMD Radeon HD 6490M, PCIe, 256 MB
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1333 MHz, 0x80CE, 0x4D34373142353237334348302D4348392020
Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1333 MHz, 0x80CE, 0x4D34373142353237334348302D4348392020
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xD6), Broadcom BCM43xx 1.0 (5.106.98.100.16)
Bluetooth: Version 4.1.3f3 11349, 2 service, 11 devices, 1 incoming serial ports
Network Service: Wi-Fi, AirPort, en1
Serial ATA Device: ST9500420AS, 500.11 GB
Serial ATA Device: MATSHITADVD-R UJ-898
USB Device: FaceTime HD Camera (Built-in), apple_vendor_id, 0x8509, 0xfa200000 / 3
USB Device: hub_device, 0x0424 (SMSC), 0x2513, 0xfa100000 / 2
USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id, 0x0246, 0xfa120000 / 5
USB Device: BRCM2070 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0xfa110000 / 4
USB Device: Bluetooth USB Host Controller, apple_vendor_id, 0x821a, 0xfa113000 / 8
USB Device: hub_device, 0x0424 (SMSC), 0x2513, 0xfd100000 / 2
USB Device: IR Receiver, apple_vendor_id, 0x8242, 0xfd110000 / 3

¿Algún problema con unir mis pitones? ¿Cómo puedo arreglarlo? ¡Gracias!

Answer 1

Encontré el mismo problema entre python27-apple y python27 (instalado por Macport). Intenté estos pasos, y funcionó para mí.

De acuerdo con los comentarios de @Evert de diferentes bibliotecas usadas por python diferentes, traté de revertir el python27-apple para que sea "activo".

sudo port select --list python

Para mi computadora, mostró:

Available versions for python:
none
python25-apple
python26
python26-apple
python27 (active)
python27-apple

en el cual python27 (por Macport) estaba actualmente activo. Entonces,

sudo port select python python27-apple

para hacer que python27-apple se active como la lib predeterminada se invocó previamente. Para verificarlo dos veces,

sudo port select --list python

Ahora mostró:

Available versions for python:
none
python25-apple
python26
python26-apple
python27
python27-apple (active)

Y el accidente de Python se había ido cuando ejecuté las secuencias de comandos.

Answer 2

Me enfrento al problema similar al usar androguard. Aunque no es lo mismo, puede ser una referencia. Mi caída también es "Error de Python de Fatal: PyThreadState_Get: no hay un hilo actual de Abort trap: 6". Ejecute "otool -L", sugiera el enlace dylib al sistema python. Prueba la solución:

1. python-config --ldflags

2. copie la salida al MakeFile correspondiente. por ejemplo: LDFLAGS + = -lm -lbz2 -lz -llzma -lsnappy -lmuparser -lpython a LDFLAGS + = -lm -lbz2 -lz -llzma -lsnappy -lmuparser -L / usr / local / Cellar / python / 2.7.10_2 /Frameworks/Python.framework/Versions/2.7/lib/python2.7/config -lpython2.7 -ldl -framework CoreFoundation

3. hacer limpio, luego hacer nuevamente

Ahora el dylib está bien, y no hay error otra vez

o

cuando usa otool -L encuentra el enlace equivocado python dylib. puede usar install_name_tool para cambiar el símbolo. me gusta:

 install_name_tool -change /System/Library/Frameworks/Python.framework/Versions/2.7/Python /usr/local/Cellar/python/2.7.6_1/Frameworks/Python.framework/Versions/2.7/lib/libpython2.7.dylib <lib>

Answer 3

Parece que estás ejecutando la python homebrew, pero ya sea que aumente Python o que las vinculaciones python de Mapnik terminen vinculadas con el sistema python proporcionado por Apple. Si una limpieza completa y reinstalación de boost y Mapnik no soluciona esto, entonces recomiendo detenerse por #mapnik irc en freenode para la depuración de la ayuda. En general, para solucionarlo necesitas llamar a otool -L en boost_python.dylib y / o en ''site_packages / mapnik / _mapnik.so'' para ver cuál terminó con un enlace al sistema python. Entonces puedes arreglarlo usando install_name_tool.

Answer 4

Puedes usar el pitón homebrew así:

/usr/bin/python2.7 yourscript.py